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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … , the team found that isolate genomes represent only 6.55% while MAGs account for about 57% of the estimated …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … gene expression within circular capture areas roughly 55-microns in diameter — about the width of a human hair. At …
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The Power of One, Amplified
… large-scale single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring … In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this … Research Council of Canada (NSERC) Discovery Grant to PFD (2019-06265). This work was also sponsored by NSF grants …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … at the time. Following the publication of their paper in 2011, Dr. Sekimoto from University of British Columbia and … Taking a conservative approach, we were able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … gene expression within circular capture areas roughly 55-microns in diameter — about the width of a human hair. At …
Learn more
An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For the other calls, we … Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her … led the team to identify a gene called Less Shattering 1 (SvLes1); gene editing studies led by co-first author Pu … were generated, though the final analyses focused on 598 individuals. Schmutz and his team assembled and …
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SPRUCE-ing Up Science
When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: Ashleigh Papp …
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