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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint … 2008. Ray won the  Director’s Award for Operations in 2017 in recognition of his tireless efforts to ensure the … Ray hired in 2007 to serve as JGI’s Business Manager. In 2012, Nick jumped the good ship JGI in favor of a step up as …
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Evolution of a Fungal Gene Expression Regulator
… least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center …
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Tracking the Origins of Methane-Producing Microbes
… that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated … viruses, while the genomes of large viruses may be only 10 times larger. And yet, while they are found everywhere, … out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in the …
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Training the Next Generation of Talent
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JGI Accepts 17 Proposals for Community Science Program
… and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual Community … Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. Many …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? … of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. S.C., B.K., and I.V.G. were supported in part by the … for open access charge: DOE [DE-AC02-05CH11231]. … Algal Genomes on PhycoCosm Data portal … Datasets …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? … scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so …
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Accelerating Metagenomics Discoveries with Deep Learning
… is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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