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Evolution of a Fungal Gene Expression Regulator
… the DNA bases themselves can also be modified. The best-known example of a modified DNA base is a methylation of the … or 5mC. In many organisms, 5mC is an important piece of how they regulate their genomes, but is not well understood in … exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at …
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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
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Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population‐specific feeding rates by invasive dreissenid mussels
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Pinning Down a Piece of Photosynthesis
… function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle … from even the most determined scientist.  Recent work in  Nature Communications takes on the challenge of … the link between photosynthesis, respiration and high-iron homeostasis,” said Nicolas Grosjean, the first author of …
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Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
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Understanding Wildfire Recovery, Starting in Soil
… look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within … of which microbes are present. This study, published in Nature Microbiology , went a step further, using both DNA …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo … the need to purify each transcription factor of interest. Nature Methods paper coauthor Lee did the initial …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … by fungi is happening much more in the leaf litter and soil near the roots. But the deeper down and away from the roots …
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Toward More Efficient Artificial Photosynthesis
… factories in plant cells. Using photosynthesis, they take raw materials including sunlight, carbon and water, to convert them into energy that is then stored. A … faster than RuBisCo, the most common CO-2 fixing enzyme in nature. The library provided the Erb lab with enzymes that …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great … there’s opportunities for borrowing and porting parts from nature — enzymes, transporters, pathways — into microbes …
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Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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