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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 … at over 180 organizations in 29 U.S. states and 35 countries. Of the 85 proposal collaborators, 58 had never …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … 2,074 genomes of large and giant viruses. More than 50,000 copies of the MCP were identified in the metagenomic … viral lineages, and predominantly in samples from marine (55%) and freshwater (40%) environments. As a result, the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … that combed datasets from around the world, finding over 125,000 partial and complete viral genomes. That study … exponentially. The latest release, IMG/VR v4 features over 15 million viral genomes, and  this most recent version is …
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DOE JGI Interns Share Their Summer Experiences
… briefly about their time at the JGI at http://bit.ly/JGI15summerinternsvids . Click here to check out photos of the …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … biological information. As I’ve said earlier, 16 to 56 percent of plant genes are poorly characterized. So the …
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Jeremy Schmutz
… and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome … kingdom. Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid … al. 2018. The genomic landscape of molecular responses to natural drought stress in Panicum hallii . Nature …
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Igor Grigoriev
… the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he … Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal genomics resource.  … al (2021) Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … Patrinos opened with this quote from Thomas Kuhn in his 25th Anniversary presentation. “Those driven by new tools and … explained. As an illustration of this, he noted the new 25th anniversary mural that local Bay Area artist Nigel …
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Frederik Schulz
… metagenomics. Nature Reviews Microbiology 20: 721 Volland, J.-M. et al. 2022. A centimeter-long bacterium … the interface of simple and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s …
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Rex Malmstrom
… active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a semi-automated stable … Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the … (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the …
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