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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … of this work.  Han is an Assistant Professor at Konkuk University in South Korea as well as a faculty affiliate in … underscored the value of taking a look at the AT family. “Essentially, the aminotransferases that we studied are …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … the last 40,000 years. The Impact Eelgrass represents one of the largest carbon sinks in the ocean — occupying just …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed … Biotechnology Training Program (NIH 5 T32 GM008349) at the University of Wisconsin – Madison. This work was also …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year … the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg Biohub, and the U.S. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … from these gardens, a team led by researchers at the University of Texas at Austin produced a high-quality …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the … in microbiome studies, these scientists (now at Stanford University) collaborated with the JGI. Working together, …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … and poplar, a team led by Hui-Ling (Sunny) Liao of the University of Florida collected forest samples of poplar and …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we will explore …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … this set of guide RNAs on  Yarrowia lipolytica to identify essential genes and genes that lead to increased lipid … and his advisor Ian Wheeldon, a chemical engineer at the University of California, Riverside. The team also included …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … to my own research and everyday routines.” Mentors: Jessen Bredeson & Albert Wu Project: “ Pangenome de Bruijn …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … across Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha …
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