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Adina Howe
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … Analysis of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will help …
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The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling
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The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
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Trent Northen
… 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … Swift CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved … on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, leaving … kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … affect their prey in different ways. They have the capacity to kill outright, replicating so thoroughly that they lyse … then allowed the team to ask, for the 34 hosts they found, how prevalent in the mat are their viruses? The abundance of …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! They are … Santa Barbara, he and his colleagues found that anaerobic fungi from herbivore poop might be a new source of novel … Symposium series. The online seminars foster discussion on how to best capture and characterize uncultivated viruses, …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … the small molecules glycerol and itaconic acid to see how the cell-free system allowed them to increase the … in the absence of cell walls. If we can continue to learn how to focus the carbon flux, we can avoid transport …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … physiologically and enzymatically, with descriptions of how their activities influence biochemical reactions. For … These specialized compounds enable organisms to respond to environmental stresses or mediate interactions …
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