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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … , is recognized as a mutualist, where both species of organism benefit from association, but was predicted to … transcriptomic dataset of sexual reproduction in early fungi and discovered genes that are critical for this …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The … called lignocellulose, are the primary components of hardy cell walls. It’s the cellulose and hemicellulose … The authors acknowledge their funding sources: Office of Biological and Environmental Research of the U.S. …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … complex wiring behind a city’s power grid. Just as the flow of electricity controls when and where lights turn on or … with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s availability to users is a …
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JGI on the 2021 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … Santa Barbara, he and his colleagues found that anaerobic fungi from herbivore poop might be a new source of novel … microbial samples from public transit stations across 60 global cities. He and his colleagues used an extensive JGI …
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Supercharging SIP in the Fungal Hyphosphere
… probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. …
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The fungus that made itself at home
… so destructive in houses. A study involving six brown rot fungi reveals the genomic changes Serpula lacrymans has … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future … the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … more interested in microbes with the potential to impact global climate change, he said. “To understand the … of Covid-19 research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was part of  the initial …
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