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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
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A Plant Root Atlas for Tracking Developmental Trajectories
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genomics data portal  Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range
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Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range
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iPHoP: A Matchmaker for Phages and their Hosts
… led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data … isolates and metagenomic datasets will strengthen future virus-host predictions. This information could open …
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The JGI Data Portal: Improving User Experience
… “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … more than 13 petabytes of data, accessible through the Genome Portal. “The task of making data more findable and … help us build a solid knowledge base that may inform future updates to one (or more) of the JGI Portals.” …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … has long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  now available to … which it is available. Wang estimated that there are 500-800 genome foundation models available on the platform.  ”We …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction▿ †
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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