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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms … Mike Wilkins and his graduate student Kaela Amundson at Colorado State University have many questions about …
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Promoting the Power of Viral Metagenomics
… led by Kyrpides. Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes … This year, however, there was a new aspect to the project - they also worked with Sharon Greenblum from the …
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Viruses Reprogram Cells into Different Virocells
… But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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Training the Next Generation of Talent
… Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … Olmstead worked with postdoctoral fellow Ben Cole on a project involving bacteria in Arabidopsis plant roots. At …
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication Manager Sarah …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar … can apply for support? A: Anyone from anywhere around the world can apply to access the JGI’s resources. Q:  Where can …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The Science Through a combination of sequencing … conditions. Additionally, high-temperature (thermophilic) microbes are of interest for their potential use in number …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … In fact, lipids can make up more than 90 percent of the microbe’s dry weight. In order to better harness these gobs …
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JGI Hosts GPU Hackathon in May
… high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … Office of Science user facility, aims to explore applications in the life sciences that can be ported to the GPU … OLCF is organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … genus has been identified as the most abundant in the world’s oceans, found in a wide range of morphologies and …
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