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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … Planck Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about our seven …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … possible to seek out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered … researchers previously applied this approach to uncover a novel group of giant viruses dubbed “Klosneuviruses.” …
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Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia
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How Filamentous Fungi Sense Food
… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … breaks down plant cell wall materials including lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow … PCR screening, and 16S sequencing. She also develops novel flow cytometry protocols for targeted recovery of specific microbes. …
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … on the discovery, development and commercialization of novel production organisms and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, …
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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … technologies, and toward a secure energy portfolio for DOE priorities.  Bik is an associate professor at the … membership in the UEC, Bik aims to serve as an advocate for early-career scientists and unconventional sample types …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … of metallic protein that no one’s ever had a structure of before,” said Crysten Blaby-Haas, a research scientist at the … University in St. Louis and the University of California at Berkeley, as well as other DOE user facilities — …
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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … key roles in regulating global nutrient cycles. The information gained from understanding the interactions between … of the data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … our understanding of life’s genomic code, advancing DOE efforts of achieving a predictive understanding of biological … meaning and relevance of new sequences. It can generate novel sequences based on the principles it learns from the …
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