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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … generate high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … for 85.2% of the C-fern assembly. While they did identify a couple WGD events, these events could not fully account …
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Pinning Down a Piece of Photosynthesis
… light, transport molecules and regulate reactions. Identifying these proteins and then figuring out what they are … set out to tackle some of these genes, expressing and purifying the range of proteins these genes produced, to identify examples that would work well for  in vitro  and  in vivo …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… investigated Chromosome 16, which contains about 3% of the human genome. They wanted to learn about the genes … of the physical memorabilia that she’s held onto over the years. The DOE brought together the people and resources … the DOE Joint Genome Institute in 1997. Over the next seven years, and in collaboration with researchers at the Stanford …
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UC Merced Interns Reflect on Their JGI Summer Projects
… in science. Since the program’s inception, more than 30 students have contributed to the research of JGI …
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Supercharging SIP in the Fungal Hyphosphere
… the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green … scientists want to take a further look into identifying genes related to biotic stresses to better understand … no. 101001675-ORIGINS) and from the FRM/FSER (FRM/FSER202302017064) to P.-M.D., from the CNRS to P.-M.D. and H.P. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… are often very different than those bred for Texas. Identifying and breeding varieties that have high productivity … differences rather than just observing them. Can we quantify them? Can we tie them to the genome? We can use common … set up these gardens, we have them to study for a number of years. And that’s a real benefit for the research program.” …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… suggests this redundancy is protective, a bit like diversifying an investment portfolio. If a stress like wildfire or … this way was challenging, according to Martin. “Twelve years ago, when we mapped the first sequenced RNA from the … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  … The U.S. Department of Energy Joint …
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JGI@25: The Little Alga That Could
… a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published … that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The … that in the original strain, a protein called RECQ3 helicase is entirely deleted, potentially resulting in …
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Back in the Lab: the 2023 Summer Intern Experience
… the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not …
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JGI@25: Solving the Mystery of the Missing Oil
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it … biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from …
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