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A Collaboration to Improve Plant Genome Annotations Across Species
… to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, a national user … inconsistency makes interpretation and integration across studies difficult. Our Plant Gene Atlas resource addresses … could be potential future targets for functional genomic studies. We also looked at the cross-species comparable …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants, including agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. Crop breeders … Spain’s Universidad de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … line is simply not true based on previous pan-genome studies. Thus, we must compare multiple polyploid genomes to …
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Supercharging SIP in the Fungal Hyphosphere
… in industry and biotechnology for the production of  clean energy . Summary Arbuscular mycorrhizal fungi, the most … prone, which limits the size and complexity of research studies that use SIP. Researchers at Lawrence Livermore National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… synthesis and broad diversity of terpenes. Until recently, studies of the TPS gene family were confined to two … in nature. As part of a proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing … to establish the feasibility of genome wide association studies for genetic traits that are desirable from a …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… do, how they work, and applying them to environmental and energy challenges. But not all scientists have the expertise … and synthesis work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … design and synthesis superpower. Through a series of case studies, JGI scientific users share how they’ve worked with …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … yet incomplete genome sequences which could bias the analyses. MAGs could also represent composites of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Making a Lichen Together
… at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens are dominant carbon and … the Fungal & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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Sequencing Technologies & Products
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… capabilities to enable great science that will help solve energy and environmental challenges. Switchgrass is a … and other traits that make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and … climate resilient switchgrass. Aside from climate-related studies, researchers have also harnessed the switchgrass …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … different soil communities for taxonomic diversity. These studies could pinpoint populations, but they said little … 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in person at the …
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Learning to Look
… , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … expanding the known diversity of these viruses, genomic analyses led the team to propose that the Inoviridae should … with humans.” The work also used resources of the  National Energy Research Scientific Computing Center , another DOE …
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