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A Step Toward Controlling Soybean Rust
… reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of … Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop …
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Picking Up Threads of Cotton Genomics
… including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … analysis on JGI’s plant data portal  Phytozome , which is a community repository and resource for plant genomes. They … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake
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You Can Move, But You Can’t Hide
… at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … receiving excellent feedback from the general research community. It can be  downloaded through NERSC . … The U.S. … This work also received support from the Genomic Science Program in the U.S. Department of Energy, Office of Science, …
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Better Genome Editing for Bioenergy
… felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to identify which …
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Fishing for Novel Cellulose Degraders
… led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial …
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High-resolution phylogenetic microbial community profiling
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How Microbes Can Protect Plants in Drier Straits
A mini-episode looking at the efforts of Pankaj Trivedi, whose … Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more …
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JGI Early Career Researchers Featured in mSystems Special Issue
Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted … (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … Berkeley National Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   … …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Cultivating Symbiotic Antarctic Microbes
… biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … along with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US …
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