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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Joe Ecker
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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Leadership
This group is responsible for institutional strategic planning, talent management, and convening of advisory committees to guide the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to …
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … along with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … Dr. Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her … of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … scientists, researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-USCCN Strain Sequencing Opportunity
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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