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… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … was identified from microbial and metagenome sequence data sets generated from a handful of hot springs, including …

… I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a …

… IMG/VR data portal …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective users with questions … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …

… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an existing data set, or the refining of new technology (e.g., …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …

… Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in …

… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint …

… having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … the bioeconomy. Summary In the past decade, many breeding tools for eucalyptus have relied on the E. grandis reference … Datasets … Datasets …

… call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform that allows users to explore data and … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …