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… — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used …

… reaching out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …

… variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for … This work was supported by an intramural seed grant (IGSP 2008001) to DA, … PL (for RNAseq). The work at the Joint Genome Institute is supported by the U.S. DOE Office of Science under Contract …

… By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … Research Scientific Computing Center (NERSC) , which is supported by the Office of Science of the U.S. Department of …

… National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation … these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the … IMG/VR data portal …

… with resequencing of 1,984 cultivars and landraces, these data capture the diversity of this crop across geographic … for future analysis and discovery. “We're building the data sets that are needed to build the algorithms of the … States Agency for International Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, …

… Biology Knowledgebase (KBase). The JGI and KBase are both supported by the DOE Biological and Environmental Research … and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …

… The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with climate … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … This work was supported through a USDA NIFA award (2021-67019-34608) to …

… Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … level genomic variation. The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a haloarchaea …

… role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received …

… Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements …

… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …