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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … scientists of secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a …
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Game On: High School Students Drive Everglades Metagenomics Study
Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help train the next generation of scientists. She shares her …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the … atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Tracing the Evolution of Shiitake Mushrooms
… often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … shrub willow have been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene likely important for sex determination and a shared genetic …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint … of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Yasuo Yoshikuni
Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This program has … and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …
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Nick Everson
Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics activities.  … & Engineering Division. Prior to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and … decompose debris, mobilize nutrients from that decay, and deliver those nutrients to tree roots and soil. These fungi … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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