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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources for organisms and environmental samples. The database aggregates relevant metadata from …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our … thing. Another way to approach it is more related to what JGI does, which is sequence genomes. And we just published … in plants, fungi, and microorganisms. If you want to collaborate, let us know. Find out more at …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … University of California, Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and … multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the FUNCODE …
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Massie S. Ballon
… S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help … Ballon is a molecular biology-trained science communicator with extensive experience shaping compelling narratives for …
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New Lineages of Life Group
… identifying potential biological threats in environmental samples: Our team develops and implements advanced methods … of potential biological threats in environmental samples. This work combines third generation sequencing and … lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean .”  Current Biology , …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … language of biology — and primed for integration with artificial intelligence tools.  LLMs aren’t just for … to the financial sector — whether to identify studies and protocols or analyze and predict market trends. “Genomes do …
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