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FICUS-NERSC/KBASE
… bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center ( NERSC … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … acknowledge the significant efforts to collect and extract DNA from these samples, many of which come from unique, …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … of a single gene to multiple genes across the species. For your genes of interest, you can look at the expression of …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Gene Expression: From On-Off Switch to Dial
… library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, which leverages an … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … a single RNA piece that recognizes a particular area in the DNA, to determine which targets might benefit from an …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Four principles to establish a universal virus taxonomy
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse …
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Nigel Mouncey
… from almost 20 years in the Industrial Biotechnology private sector, as well as research expertise in secondary … genetics that started with his education and carried forward into his roles as a senior research scientist at … and today, focuses on continuing to build and position JGI as a leading integrative genome science user facility. …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … sgRNA sequences: six for every gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But … on the entire food web, and therefore ecosystem services that we all depend on,” said Mock. Mock and the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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