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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's … In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries of the …
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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … economic value as both biofuel feedstock and their role in carbon sequestration. Poplar trees grow quickly in a variety … soil chemistry offers insights into how these ecosystems cycle nutrients like nitrogen and carbon, as well as …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … a modified version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive … For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater ecosystems …
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The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As … to have a substantial influence on the global carbon cycle. All methanogenic archaea use one of three pathways …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… initiatives in bioenergy crop improvement and terrestrial carbon transformations.” The JGI’s large-scale call included … Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the Tara Oceans Expeditions that … marine food web base, they also feature in many nutrient cycles. Thus, having reference  Chaetoceros genomes would …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on … in the ocean drive the biological pump that takes carbon from the atmosphere and keeps it in the deep ocean. … oceans on the microbial populations and the global carbon cycle. Tracking large-scale marine events such as The Blob …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest for their potential … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … Additionally, these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon … the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER …
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