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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting … Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS proposals have helped advance … of data for each of the different analysis? A:  We go from sample submission to data analysis, and we can help train …
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Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
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Chromosome evolution and the genetic basis of agronomically important traits in greater yam
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Dynamics and activity of an ammonia-oxidizing archaea bloom in South San Francisco Bay
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When “The Blob” Made It Hotter Under the Water
… began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … shared their findings in Communications Biology . They reported that the heatwave caused the microbial populations …
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JGI at the AGU Fall Meeting
December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and Resources, Open-Call … the map: continental-scale context for thousands of newly sampled microbial genomes from North American watersheds …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Laboratory (Berkeley Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental … between.” To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … ) produces a plethora of antibiotics called zealexins. Even though scientists have identified at least 15 zealexins, … scientists a bigger bang for their buck. The research team reports that transferring just four genes encoding these …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … 52,515 microbial draft genomes generated from environmental samples around the world, expanding the known diversity of … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … the University of Konstanz and the University of Vienna  reported recovering draft metagenome-assembled genomes for …
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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