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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… now available to the global research community able to not just analyze but also create DNA sequences mimicking an array … sequences based on the principles it learns from the data about genetic structure — carrying with it the potential … Energy Research Scientific Computing Center, through allocations funded by BER. The View from GenomeOcean’s Horizon …
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Supercharging SIP in the Fungal Hyphosphere
… have successfully automated aspects of a commonly-used process for studying microbial communities, with … complexity of research studies that use SIP. Researchers at Lawrence Livermore National Laboratory and the U.S. … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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Tracing the Evolution of Shiitake Mushrooms
… highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the … (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … Alternate Metabolic Pathways And there is something special about these new lineages recently tied to methanogenesis. …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… tools and techniques applied to samples collected from acidic iron-oxide microbial mats in Yellowstone … (thermophilic) microbes are of interest for their potential use in number of biotechnological applications. Molecular … amplified genomes from samples collected from several locations to thoroughly characterize the archaeal lineage, …
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Gotta Catch 'Em Gall
… young in structures called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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Toward More Efficient Artificial Photosynthesis
… The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … system. The Impact Photosynthesis harnesses carbon captured from the atmosphere in a process that generates energy. The … (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with zealexin … Research was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from …
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), …
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