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Fungal Friends or Foes in Plant Roots
… fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the … The sequencing project was funded by the U.S. Department of …
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When “The Blob” Made It Hotter Under the Water
… began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. … tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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JGI@25: From Life at the Extremes to Editing Genomes
… and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of that first – and subsequent – meetings is here .) Working with the JGI, Banfield … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… from 14 organizations across nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen …
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Building Sphagnum Genomic Resources
… decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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JGI at the AGU Fall Meeting
… proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and Resources, Open-Call …
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Extracting the Secrets of Secondary Metabolites
… and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell … to provide a perspective on giant virus diversity, and how sequencing and bioinformatics have sped up the study of … simultaneously, these genomic studies provide information about virus hosts. As a result, the outcomes of these …
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JGI@25: Strengthening Soybean
… first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he … ASR can decimate up to 60-90% of its yield.  (Learn more about the soybean genome sequence and ASR in this JGIota, a …
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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …
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Graduate Students Get Thesis Research Opportunity at the JGI
… UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a remarkable opportunity to … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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