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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose … responsibility and accountability Promote utilization of JGI products and services while nurturing a fresh cohort of …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and … capabilities.    Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing …
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VEGA Symposium
… JGI Organizers … Jasmine Bunn , JGI Administrative Support …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … various bioinformatic tools and comprehensive curated databases, including nomenclatural and genomic information …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all … Deputy of Operations provides oversight and leadership of JGI operations infrastructure, including space and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly available data, … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein … soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supporting Global Research into Actinomycetes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a … user-available API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible comments. Its purpose is to …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A …
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