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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … these microbes. A better understanding of virus-host interactions opens the possibility of using phages to …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework …
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Nikos Kyrpides
… Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis … genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum
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Microbiome Data Science: Understanding Our Microbial Planet
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Exabiome: Advancing Microbial Science through Exascale Computing
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Busting the Unbreakable Lignin
… fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … at Lawrence Berkeley National Laboratory, and two DOE Bioenergy Research Centers, the Joint BioEnergy Institute … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… to the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their … individual researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for … sequences. Roux was first author on a study featuring a new program called iPHoP , which combines and evaluates multiple …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is … been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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