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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once … strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … identifying viruses across many thousands of genomes and metagenomes, called geNomad (watch Antonio Camargo present …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the … Metabolic reprogramming, Schulz explained, makes the host function better under certain conditions, which then helps …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities
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The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
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