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Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1 ▿
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Complete Genome Sequence of an Evolved Thermotoga maritima Isolate
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … soil samples from the four sites tested.  They found Euryarchaeota to be the most common phylum of Archaea.  …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a … identified a gene associated with leaf angle, which determines how much sunlight leaves can get and in turn serves as …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … of plant metabolism. This metabolism, called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … biomass carbohydrates — glucose and xylose — into fatty acids that could be used for renewable fuel. In fact, lipids …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop … workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data …
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Genome Sequence of the Arctic Methanotroph Methylobacter tundripaludum SV96
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