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Annotation of metagenome short reads using proxygenes
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Trent Northen
… 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: … with statistical significance. Nat Commun. 13, 2510 (2022). https://doi.org/10.1038/s41467-022-30118-9 Swift CL, et … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery
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JGI Interns at UC Merced Earn CAMP Merit Awards
… and inclusion in science and research, two undergraduate students from UC Merced recently had summer internships … both California Alliance for Minority Participation (CAMP) students at UC Merced. CAMP is a statewide initiative …   “It is a beautiful thing, that our young campus earned 25% of the research awards,” said Jesús Cisneros, director …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free … to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal … through the Emerging Technologies Opportunity Program at the U.S. Department of Energy (DOE) Joint Genome …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the … in length, while the previous version had an average of 25,000 bp pieces. That’s the difference between assembling a …
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Corals in Hot Water Get Help From Their Microbes
As waters warm due to climate change, corals are in mortal peril. But corals comprise … and a little-characterized microbiome. When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help them take the heat. …
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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SPRUCE-ing Up Science
JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: Ashleigh Papp …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science … at the JGI, we were able to design large-scale functional screens for characterization of new enzymes and use the data … Institute of Aquatic Science and Technology in September 2021. Robinson stressed that the DNA Synthesis Science …
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Marine Microbe Contains Multitudes
Pacific Subtropical Gyre, microbes tend to stay localized at different depths. But SAR324 can be found throughout the … by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant GBMF … Facility, is supported under contract number DE-AC02-05CH11231. This work is a contribution of the Simons …
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