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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, …
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Matthew Kellom
… interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes … Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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Rex Malmstrom
… a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound …
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ClaMS: A Classifier for Metagenomic Sequences
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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Frederik Schulz
… biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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Fungal Friends or Foes in Plant Roots
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture … (DOE) Joint Genome Institute, a DOE Office of Science User Facility, and supported by the Office of Science of the …
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Making a Lichen Together
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed … from the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to …
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Work With the JGI! Tips for a Winning CSP Proposal
… stage, anywhere in the world, for free. We accept new projects related to energy and the environment several times … this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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