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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building on … microbiome data. In other environments, such as terrestrial soil, having additional isolates and metagenomic datasets …
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … carbon and mitigating greenhouse gas emissions, and understanding how to improve soil health can help mitigate …
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s … KARE field site and then collect and process the samples starting at 10am Pacific time. JGI researchers helped …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. … in actinomycetes. He is particularly interested in understanding how, when and why microbes decide to produce … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types … sequencing projects can be found here . The quality of the starting material is one of the greatest predictors of a …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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