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Comparative transcriptomics uncovers poplar and fungal genetic determinants of ectomycorrhizal compatibility
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Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy
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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages
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Hiroshi Otani
… research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … 2022 Jun 17;13(1):3502. Udwary DW, Otani H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … have better, easier access to these viral genomes. The new database was called IMG/VR. It featured samples from …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto … defends her dissertation in May. Since its inception in 2014, more than 20 UC Merced students have contributed to the …
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Dan Rokhsar
… and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program …
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JGI at the AGU Fall Meeting
… with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here … on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … Hall D-F poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types …
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JGI@25: From Life at the Extremes to Editing Genomes
… Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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