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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … on Earth,” Weizmann explained.   These algae take up carbon dioxide and emit oxygen and other gasses — some of … the sea, that you all know,” Vardi shared. Crucial for the global carbon cycle, photosynthetic phytoplankton do not …
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Decoding Yellowstone’s Microbial Mats
… Along the way, they’ve encountered surprises, adopted new technologies, and made a few discoveries about the microbial …
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Triggering Morel Fruiting
… revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome …
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W. Berkeley Kauffman
… the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha … updated to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … vastly outnumber the microbes. Advances in sequencing technologies and computational tools have uncovered a … in RNA without a DNA stage. “I would argue RNA viruses globally are even less known than DNA viruses,” said Simon …
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Scaling Up Existing Skill Sets
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last … tools and other standardized data resources that the global research community can access and use to manage the …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… are open, it’s the same pore in the leaf through which carbon dioxide enters the leaf for photosynthesis.  ALISON:  … light and air — in particular, the part of the air that’s carbon dioxide. KAROLINA: When plants get really hot or dry, … one that does what’s called C3 metabolism, named for a 3-carbon compound that plays an essential role. But other …
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Behind the Paper: Hot Springs Metagenomics
… Adapting the graduate research experience amidst a global pandemic   …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering … Clostridium autoethanogenum. The microbe can utilize carbon oxides, including the greenhouse gas carbon dioxide, … LanzaTech. “JGI has always been a leader in DNA sequencing technologies. The DNA synthesis program combines these …
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Effects of Polar Light Cycle on Microbial Food Web
… greatly contributes to our larger understanding of carbon and other nutrient cycles on a global scale. Summary Ace Lake, located in the Vestfold … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows …
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