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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of …
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JGI on the 2021 Highly Cited Researchers List
… colleagues used an extensive JGI database to investigate viruses detected in the samples. Simon Roux co-organized the … on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and functionally explore …
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Virus-Microbe Interactions of Mud Island Mangroves
I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … wetlands.” A chapter of Rambo’s research focuses on how viruses influence carbon cycling in coastal mangroves. His …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … and large-scale data analysis to better characterize how viruses infect soil microbes and influence how soil …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal hosts release organic carbon. … that CRISPR-Cas systems target infectious agents like viruses and plasmids. First,  Ca . Altiarchaeum had …
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Nikos Kyrpides
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s … ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and Analysis ( CAMERA ). … …
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Waiting to Respire
… analyzed single amplified genomes of Margulisbacteria from marine samples. The research teams opted to collaborate on a …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… rely on dissolved zinc to photosynthesize. Thomas Mock, a marine microbiologist at the University of East Anglia, …
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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of …
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Dan Rokhsar
National Cotton Council 2009 Friday Evening Lecturer, Marine Biological Laboratory 2000 John Simon Guggenheim …
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What Happens Underground Influences Global Nutrient Cycles
… reaction networks, and also assessing the role of viruses in the soil microbiome. Another accepted proposal in …
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