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Fungal & Algal Program
… The program seeks to expand our understanding of algal biology using genomics and multi-omics by working with … understanding of how fungi and algae contribute to ecosystems and industries. The program also explores …
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Integrating Experimentation with Data
… Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled Laboratory Automation, Data … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at …
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Building Sphagnum Genomic Resources
… Environments) project, assessing how northern peatland ecosystems respond to increases in temperature and elevated … the Joint Genome Institute supported by the Biological Systems Science Division and the  Spruce and Peatland …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… collaborations in the fields of genomics, structural biology, bioimaging, and water research. The meeting … discussed a diverse range of topics related to structural biology, single cell and systems biology, omics, and big data science, machine … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Frequently Asked Questions: Proposal Submission
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… Internship co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the past decade … and a teaching assistant for the UC Merced Quantitative and Systems Biology department.   Jonelle Basso , a JGI research …
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Dan Rokhsar
… shifted from condensed matter physics to computational biology, genomics and evolutionary biology. Dr. Rokhsar’s research is focused on understanding … genetic methods, and comparative developmental biology. In addition to this evolutionary focus, his work on …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… and an outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get … Mainly actinos. Yeah. DAN: Yeah. I mean, those are the systems that are best understood right now. So yeah. If you …
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Silver age of GOLD introduces new features
… scheme to better define the genomic information and ecosystems. These curated data are accessible on JGI data … National Microbiome Data Collaborative ( NMDC ) and the DOE Systems Biology Knowledgebase ( KBase ) — and aims to extend these …
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Learning to Look
… these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival Many bacteria have CRISPR-Cas systems that incorporate short sequences from infecting …
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … of archaea and bacteria, millions of  microbes govern ecosystems. These organisms carry out important environmental … methods. In building this program,  described in Plos Biology , the research team led by scientists at the U.S. …
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DAP-seq Drives Robust Mapping of Gene Regulation
… upon , allowing the platform to enable discoveries in plant biology and beyond at an unprecedented scale.  “All of the … work helps advance a fundamental understanding of genome biology and developing genome-scale engineering technologies … “We developed these methods and found some really exciting biology in our datasets, but we know that we’ve only …
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