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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Fourteen genome sequences from bacterial, environmental isolates from the Cotton Glacier stream, Antarctica
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Seven genome sequences of bacterial environmental isolates from the western coast of the Greenland Ice Sheet
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How to Target a Microbial Needle within a Community Haystack
… for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … about environmental samples starts with researchers first sequencing the complex community and then separating out the … and was demonstrated using a specific group of marine bacteria called “Vis6” that are found in North Sea algal …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … Wisconsin Institute for Discovery (WID) are interested in sequencing secondary metabolite-producing environmental … Ozias-Akins from the University of Georgia is interested in sequencing relatives of switchgrass that are apomictic. This …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has … different Swiss Army knives — explaining a bit more about why and how nitrogen metabolism is so robust and varied.  …
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Accelerating Metagenomics Discoveries with Deep Learning
… learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … capitalize on these kinds of abilities by applying them to sequencing data. At the workshop, Volkan Sevim, a … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new … organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … actually quite significant knowing that there’s one billion bacteria in a teaspoon of soil.” She added that overall, …
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Tanja Woyke Elected to American Academy of Microbiology
… One example, published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied clades, …
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps … target specific microbes or change the behavior of this bacteria — most likely there is a virus that is already …
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