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High‐density linkage map reveals QTL underlying growth traits in AP13×VS16 biparental population of switchgrass
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Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes
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Neha Varghese
… bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides … implementation of microservices in conjunction with the IMG platform. …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the … this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the …
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Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library Construction … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be converted to energy, are … was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … genomics analysis initiatives. GOLD not only curates sequencing projects carried out at the U.S. Department of … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their … how to improve soil health can help mitigate the effects of climate change. The team’s study used samples …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. Many fungi have … efforts appear to be redistributing water availability. By sequencing the millet rhizosphere and endosphere communities …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science … — meaning these habitats are more vulnerable to the effects of a changing climate. Knowing more about how … duplication event — bioinformatics expertise, as well as sequencing for all global populations of eelgrass used in …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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