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Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
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Len Pennacchio
… 2015-  Co-Chair, “Advances in Genome Biology & Technology-Precision Health” 2013-  Instructor Leena Peltonen School of Human Genomics, Sanger Center 2011-  Co-Organizer “Systems Biology of Gene Regulation and Genome Editing,” Cold Spring Harbor Asia 2011-  Board of Directors, The Genome Partnership 2008- …
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A More Intuitive Phytozome Interface
… genomes based on which version of Phytozome (e.g., 9, 10, 11, 12) they were first released in.  Are any genomes from …
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Graduate Students Get Thesis Research Opportunity at the JGI
… opportunity to launch a pilot project and begin the work of understanding how engineered environments contribute to … with her study of microbes in California’s manmade water transport canals. “This award allows me to work directly …
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … decade” by Clarivate Analytics. Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor Grigoriev (Cross-field)  Marcel …
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Chapter One Structural, Mechanistic and Genomic Insights into OCP-Mediated Photoprotection
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… Berkeley National Laboratory (Berkeley Lab). Specific understanding of this symbiosis could offer improvements in … model system, so future directions will also include targeting biofuel feedstocks in similar studies. “We would …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice on normalizing … .  Q:  Is it possible to use these same techniques in drug discovery and synthesis from medicinal plants? If yes, …
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Pinning Down a Piece of Photosynthesis
… are proteins — amino acid structures that harvest light, transport molecules and regulate reactions. Identifying … work in  Nature Communications takes on the challenge of understanding one of these proteins — and its role in … longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts …
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Taking Stock of the Known and Unknown Microbial Space
… global nutrient cycles. The information gained from understanding the interactions between microbes, hosts, and … cultivate new microbial species.” Targeted Explorations for Understanding the Microbial World Corresponding author …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in these mats helps … pairs was close to 1. Even the most abundant virus was only 11 times more abundant than its host. There just don’t seem … User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology Institute …
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