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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to the results of the sugar-related tests, they pinpointed multiple genes that were previously missed in knock-out …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint … more than two copies, a condition known as polyploidy. The multiple copies arise from past genome duplication, which … a method to correctly identify polyploid subgenomes without needing to know the genomes of their ancestors. The …
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JGI Mural
… The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and … more clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of clonally propagated plants to address these questions.” Multiple collection methods were applied to gather the …
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … technology simplifies this identification process. Multiple factors mediate transcription, including … assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the …
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Reactive iron, not fungal community, drives organic carbon oxidation potential in floodplain soils
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Chaparral wildfire shifts the functional potential for soil pyrogenic organic matter and nitrogen cycling
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Floodplain nitrifiers harbor the genetic potential for utilizing a wide range of organic nitrogen compounds
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a … Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing … Notable Stories …
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