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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … different gene deletions in four gammaproteobacterial species, and then removing the editing machinery afterward …
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Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … occurring ploidy levels, called cytotypes, across the species. These are primarily tetraploids (4X or four copies … alters genomic diversity, fitness, and adaptability. Using a combination of genomic, quantitative genetic, …
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Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
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A comparative genomics study of 23 Aspergillus species from section Flavi
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Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction
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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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What Happens Underground Influences Global Nutrient Cycles
… Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil profile. The goals of their FICUS proposal …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have … pool of genetic material comprised by all members of a species, the pan-genome of haloarchaea contains the parts of …
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