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A renaissance for the pioneering 16S rRNA gene
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Persistence and plasticity in bacterial gene regulation
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Fishing for Novel Cellulose Degraders
… characteristics. When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a … and unknown. The challenge remains to learn more about what microbes are present in any given …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold … conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the samples shared a … carbon cycling. However, the high degree of variability in what types of microorganisms were found at each site and the …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … processes both carbon and nitrogen. This research team combined computational and experimental approaches to look … This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across different …
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JGI@25: Using Team Science to Build Communities Around Data
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic mechanisms — … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex … the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, … with Y chromosomes in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
The  National Ecological Observatory Network (NEON) is a network of field … ahead of filing a proposal? A:  If you have a good idea of what you want, go straight to  Sample Use Request Form . … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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SIPs with Standards
Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are … accessible to more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. …
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