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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … of achieving a predictive understanding of biological systems. “If we could model the genome as if it were a …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, … published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by … Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … event (0.14 Mya) with a maternal  B. stacei parent. The analysis also revealed that these two  B. hybridum types …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial …
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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