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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … His group is developing novel methods for enabling large-scale comparative analysis, as well as mining and … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the …
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JGI@25: From Life at the Extremes to Editing Genomes
… past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine …
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JGI announces final round of 2022 Functional Genomics awardees
Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from … biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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Four principles to establish a universal virus taxonomy
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
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Characterization of Streptomyces nymphaeiformis sp. nov., and its taxonomic relatedness to other polyhydroxybutyrate-degrading streptomycetes.
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JGI Scientists Pen Genome Watch Articles
Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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