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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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A Plant Root Atlas for Tracking Developmental Trajectories
… , a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… metabolites and associated genes are great resources for bioremediation, new agricultural applications or … they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Improved genome annotation for Zymomonas mobilis
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … large metabolite databases by running 1000s of metabolite standards, and development of high-throughput untargeted … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Accessibility/Section 508 Statement
The U.S. Department of Energy is committed to making its electronic and information technologies accessible to individuals with … or concerns related to the accessibility of this website to DOE Section 508 Coordinator mailbox.   For more information …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … The team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … Fungal & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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