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The parallelism motifs of genomic data analysis
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A Guide to Gene‐Centric Analysis Using TreeSAPP
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … bacteria, archaea and fungi. We thought this kind of analysis would provide a framework for the evolution of this … the JGI provided DNA synthesis capabilities to enable functional testing of these enzymes. Yasuo Yoshikuni, head …
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis▿ †
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Scaling Up Existing Skill Sets
… in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer internship with the JGI …
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Katherine Louie
… spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running … for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying unknown compounds … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production ▿
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Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives
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Molecular characterization of L-413C, a P2-related plague diagnostic bacteriophage
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … question, despite of their well-designed sampling and analysis of their data at the time. Following the …
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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