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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population‐specific feeding rates by invasive dreissenid mussels
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous … algae and kept seeing what looked like mistakes by the gene prediction algorithms. I decided to dig in a little deeper, …
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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Baltic Sea coastal sediment-bound eukaryotes have increased year-round activities under predicted climate change related warming
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … to accurately perform functional assessment, host prediction, and phylogenetic analysis. The development of … genome versus those from the host organism. Without this prediction step, numerous genes for antibiotic resistance …
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The genome of the Gram‐positive metal‐ and sulfate‐reducing bacterium Desulfotomaculum reducens strain MI‐1
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their … graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … on cotton production, and the crop’s annual economic impact of $500 billion worldwide underscores its value and … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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