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Terabase-scale metagenome coassembly with MetaHipMer
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ClaMS: A Classifier for Metagenomic Sequences
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A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
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Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria
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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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Regulation of hair cell and stomatal size by a hair cell-specific peroxidase in the grass Brachypodium distachyo n
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire … Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy … “They produced fantastic scientific results this year by assembling a collection of large datasets that will enable …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the … to viral lineages, and predominantly in samples from marine (55%) and freshwater (40%) environments. As a result, … datasets becoming available but also complementary single-cell sorting and sequencing of viruses together with their …
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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