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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … campuses with this being our largest and most successful one. It’s proven to be a really good model for us that we … loved the opportunities that the program provides. He mentioned working with Elizabeth Dumont , Dean of the School of …
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the … and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt … and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Tanja Woyke
… was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … with an expanded complement of translation system components. Science 356, 82-85. Tsementzi et al. 2016. SAR11 … nitrogen loss. Nature 536, 179-183. Ivanova et al. 2014. Stop codon reassignments in the wild. Science 344, 909-913. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged metagenomics to …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … metabolites and associated genes are great resources for bioremediation, new agricultural applications or …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University of Duisburg-Essen, the Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute … knowledge and address global challenges.”  During the workshop UDE and Berkeley Lab scientists discussed a diverse …
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The Case for Conservation
… advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of … genes of interest could be associated with a plant’s sex. One outcome could be superfemale plants that have increased …
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JGI Early Career Researchers Featured in mSystems Special Issue
… what the next five years of innovation could look like. In one article, Micro-Scale Applications head Rex Malmstrom and … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got turned down consistently, with one of his favorite answers being, “It would take a team of … and Environmental Education (E4) community-building workshop at the  2019 Association for Environmental Studies and …
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Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium
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Reversal of carbapenem-resistance in Shewanella algae by CRISPR/Cas9 genome editing
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