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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s …
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Mapping the Earth’s Hidden Fungal Kingdom
… past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … language. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science … like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark imbalance. More recently …
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Game On: High School Students Drive Everglades Metagenomics Study
… class at Florida’s Boca Raton Community High School. The course had a defined set of objectives, and started with an … Metagenome Program Head at the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed …
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Emiley Eloe-Fadrosh
… Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data Collaborative … the Metagenome Science Program on their research are encouraged to schedule time with Emiley Eloe-Fadrosh . Click to … Evolution & Genomics, F1000Prime Reviewer for major journals and funding agencies and philanthropic organizations …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… study? How many samples are typically involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar … anywhere around the world can apply to access the JGI’s resources. Q:  Where can I get information for funding by JGI? …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling … islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to …
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Rex Malmstrom
… also carries out custom preparative work for difficult user projects, including those that require fluorescence … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of … sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 Kashtan, N et al. 2014. Single-cell …
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DAP-seq Drives Robust Mapping of Gene Regulation
… scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this advancement holds the potential to … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also … of genomic DNA at DSMZ for GEBA-Actino and similar projects. …
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Building Sphagnum Genomic Resources
… Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused … magellanicum genome is currently being assembled. These resources would provide the research community with the ability … like other wetlands, can act as a carbon sink or carbon source. Sulfur cycling is a carbon flux regulator since …
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Yasuo Yoshikuni
… synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also … Editorial board member of Synthetic Biology (Oxford Journal) Review committee member of International Journal of …
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