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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of … to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean sequence up to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … production. Building on the framework provided by our new switchgrass manuscript , we plan to use existing data as … taxa) are faced with pronounced environmental fluctuations. New findings from this line of research combined with past …
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VEGA Symposium
… – $300 Students & Postdocs – $250   Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications … Michael Baym, Harvard Medical School Laurence Ettwiller, New England Biolabs Kathryn Kauffman, University at Buffalo … (Zymo Research Corp) Vivek Mutalik (LBNL) Peter Weigele (New England Biolabs) …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … from infecting viruses and phages. In the event of a new infection, the microbes use the genetic information … cas1 genes. Further analysis led to the identification of a new family of Cas proteins, named Cas14. Using these …
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Webinars on Offerings & Capabilities
… can find additional webinars covering how to use our data portals here.  …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of … Narrative for Lachnospiraceae sp. C1.1 genome on KBase …
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Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
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De novo Nanopore read quality improvement using deep learning
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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