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Triggering Morel Fruiting
… litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying … while increasing the organic matter and fertility of the soil. Morels (Morchella spp.) were previously considered … O’Donnell & Volk) to successfully fruit in common farmland soils. Compared to the contingent fruiting in the wild, this …
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Marine Microbe Contains Multitudes
… sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … Lab), through the JGI Community Science Program . The metagenomes were also processed using the JGI-developed … Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes and single cell genomes, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental … data analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was one of the eight JGI …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize … that decay, and deliver those nutrients to tree roots and soil. These fungi help shape a forest’s ecology. They store … nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree health and carbon storage — skills …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic … genomic variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Transcriptional and metabolic stasis define desiccation-induced dormancy in the soil bacterium Arthrobacter sp. AZCC_0090 until water vapor initiates resuscitation
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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